QuPath is open source software for bioimage analysis

Digital Pathology Imaging Software

Do you know anyone using QuPath?

QuPath is often used for digital pathology applications because it offers a powerful set of tools for working with whole slide images - but it can be applied to lots of other kinds of image as well.

Features Include:

  • Powerful annotation & visualization tools using a modern JavaFX interface.

  • Built-in algorithms for common tasks, including cell and tissue detection.

  • Interactive machine learning, both for object and pixel classification.

  • Compatibility with other popular open tools, including ImageJ, OpenCV, Java Topology Suite and OMERO.

  • Support for many image formats through Bio-Formats and OpenSlide, including whole slide images and multiplexed data.

  • Groovy scripting for customization and deeper data interrogation.